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Sep 4

Emergent Misalignment Is Not Magical

Fine-tuning large language models (LLMs) on narrowly harmful datasets can lead to misalignment broadly, a phenomenon known as emergent misalignment (EM). EM poses a challenge for AI safety and our understanding of LLMs. Prior work often frames EM as an unexpected behavior, and explains it by appealing to general misalignment directions or anthropomorphizing it as acquiring an evil persona. However, the mechanisms behind these framings remain obscure. In this work, we show that EM is a predictable and data-dependent generalization phenomenon. By examining the base model's representation of EM training data and evaluation prompts, we find that evilness after EM training is highly predictable from representational distance: the closer an evaluation prompt is to training data centroid, the more evilness it elicits from EM models after training (with an average Spearman correlation of -0.73 across 12 model-dataset settings). Building upon this analysis, we further demystify EM by showing that (1) its effectiveness changes significantly based on training data format; (2) there is not a general misalignment direction that transfers across different EM models; (3) the effect of EM is fundamentally different from persona changes. Furthermore, we extend the EM generalization metric from a scalar distance to a dataset-specific generalization direction, which robustly predicts EM models' evilness under semantics-preserving prompt perturbations including appending random tokens and paraphrasing, where other methods do not reliably generalize.

  • 4 authors
·
Aug 28

When Correct Demonstrations Hurt: Rethinking the Role of Exemplars in In-Context Learning

In-context learning (ICL) is often motivated by the intuition that demonstrations help because they provide correct input-output examples. However, we reveal a counterintuitive phenomenon: correctness does not guarantee exemplar utility, and some correct demonstrations can even reduce ICL accuracy. To study this correctness-utility gap, we introduce task-preserving perturbations, where only the exemplar input is changed, while the example remains a correct instance of the same task. Concretely, each perturbed exemplar is assigned the target induced by the task mapping. This framework covers both label-updating perturbations, where task-relevant semantics change and targets are recomputed, and stricter target-preserving perturbations, where the original target remains valid. We formalize the resulting failure mode as contextual evidence shift: task-preserving perturbations can change the effective mixture of evidence used by the model for contextual inference, thereby separating exemplar correctness from exemplar utility. Across sentiment classification, logical reasoning, and math word problems, we find that task-preserving perturbed demonstrations can substantially degrade ICL performance, especially for smaller models, harder tasks, and higher perturbation ratios. Our results show that robust ICL requires evaluating not only whether demonstrations are correct, but also how they influence contextual inference. Code is available at https://github.com/Chenghao-Qiu/Task-Preserving-ICL.

  • 5 authors
·
May 24

Bias in the Loop: Auditing LLM-as-a-Judge for Software Engineering

Large Language Models are increasingly used as judges to evaluate code artifacts when exhaustive human review or executable test coverage is unavailable. LLM-judge is increasingly relevant in agentic software engineering workflows, where it can help rank candidate solutions and guide patch selection. While attractive for scale, current practice lacks a principled account of reliability and bias: repeated evaluations of the same case can disagree; small prompt edits can swing outcomes; and seemingly semantics-preserving, human-equivalent perturbations may elicit divergent verdicts. This paper studies LLM-as-a-Judge for code through a measurement-first lens. We analyze two pointwise judging regimes across code generation, code repair task, and test generation, and we systematically probe prompt-induced biases. Our study considers difficulty levels for repeated runs and controlled prompt interventions that isolate one presentation cue at a time, and it evaluates judges using consistency and sensitivity to bias. We find that judge decisions are highly sensitive to prompt biases even when the underlying code snippet is unchanged. Across all three tasks, several biases systematically shift preferences toward the option favored by the prompt, improving accuracy when that option aligns with the gold answer but substantially reducing it otherwise. In some settings, these effects are large enough to change task-level conclusions and alter relative model rankings. These findings show that reported judge performance may reflect prompt artifacts rather than stable assessment ability, posing a direct threat to the validity and reproducibility of code evaluation. We therefore argue that LLM-as-a-Judge studies should report bias sensitivity alongside accuracy and incorporate explicit controls to support more trustworthy model comparison in software engineering.

  • 3 authors
·
Apr 17

Universal Adversarial Perturbations for Vision-Language Pre-trained Models

Vision-language pre-trained (VLP) models have been the foundation of numerous vision-language tasks. Given their prevalence, it becomes imperative to assess their adversarial robustness, especially when deploying them in security-crucial real-world applications. Traditionally, adversarial perturbations generated for this assessment target specific VLP models, datasets, and/or downstream tasks. This practice suffers from low transferability and additional computation costs when transitioning to new scenarios. In this work, we thoroughly investigate whether VLP models are commonly sensitive to imperceptible perturbations of a specific pattern for the image modality. To this end, we propose a novel black-box method to generate Universal Adversarial Perturbations (UAPs), which is so called the Effective and T ransferable Universal Adversarial Attack (ETU), aiming to mislead a variety of existing VLP models in a range of downstream tasks. The ETU comprehensively takes into account the characteristics of UAPs and the intrinsic cross-modal interactions to generate effective UAPs. Under this regime, the ETU encourages both global and local utilities of UAPs. This benefits the overall utility while reducing interactions between UAP units, improving the transferability. To further enhance the effectiveness and transferability of UAPs, we also design a novel data augmentation method named ScMix. ScMix consists of self-mix and cross-mix data transformations, which can effectively increase the multi-modal data diversity while preserving the semantics of the original data. Through comprehensive experiments on various downstream tasks, VLP models, and datasets, we demonstrate that the proposed method is able to achieve effective and transferrable universal adversarial attacks.

  • 3 authors
·
May 8, 2024

The Semantic Trap: Do Fine-tuned LLMs Learn Vulnerability Root Cause or Just Functional Pattern?

LLMs demonstrate promising performance in software vulnerability detection after fine-tuning. However, it remains unclear whether these gains reflect a genuine understanding of vulnerability root causes or merely an exploitation of functional patterns. In this paper, we identify a critical failure mode termed the "semantic trap," where fine-tuned LLMs achieve high detection scores by associating certain functional domains with vulnerability likelihood rather than reasoning about the underlying security semantics. To systematically evaluate this phenomenon, we propose TrapEval, a comprehensive evaluation framework designed to disentangle vulnerability root cause from functional pattern. TrapEval introduces two complementary datasets derived from real-world open-source projects: V2N, which pairs vulnerable code with unrelated benign code, and V2P, which pairs vulnerable code with its corresponding patched version, forcing models to distinguish near-identical code that differs only in subtle security-critical logic. Using TrapEval, we fine-tune five representative state-of-the-art LLMs across three model families and evaluate them under cross-dataset testing, semantic-preserving perturbations, and varying degrees of semantic gap measured by CodeBLEU. Our empirical results reveal that, despite improvements in metrics, fine-tuned LLMs consistently struggle to distinguish vulnerable code from its patched counterpart, exhibit severe robustness degradation under minor semantic-preserving transformations, and rely heavily on functional-context shortcuts when the semantic gap is small. These findings provide strong evidence that current fine-tuning practices often fail to impart true vulnerability reasoning. Our findings serve as a wake-up call: high benchmark scores on traditional datasets may be illusory, masking the model's inability to understand the true causal logic of vulnerabilities.

  • 6 authors
·
Feb 1

Questioning the Stability of Visual Question Answering

Visual Language Models (VLMs) have achieved remarkable progress, yet their reliability under small, meaning-preserving input changes remains poorly understood. We present the first large-scale, systematic study of VLM robustness to benign visual and textual perturbations: pixel-level shifts, light geometric transformations, padded rescaling, paraphrasing, and multilingual rewrites that do not alter the underlying semantics of an image-question pair. Across a broad set of models and datasets, we find that modern VLMs are highly sensitive to such minor perturbations: a substantial fraction of samples change their predicted answer under at least one visual or textual modification. We characterize how this instability varies across perturbation types, question categories, and models, revealing that even state-of-the-art systems (e.g., GPT-4o, Gemini 2.0 Flash) frequently fail under shifts as small as a few pixels or harmless rephrasings. We further show that sample-level stability serves as a strong indicator of correctness: stable samples are consistently far more likely to be answered correctly. Leveraging this, we demonstrate that the stability patterns of small, accessible open-source models can be used to predict the correctness of much larger closed-source models with high precision. Our findings expose a fundamental fragility in current VLMs and highlight the need for robustness evaluations that go beyond adversarial perturbations, focusing instead on invariances that models should reliably uphold.

  • 3 authors
·
Nov 14, 2025

Adversarial Defence without Adversarial Defence: Enhancing Language Model Robustness via Instance-level Principal Component Removal

Pre-trained language models (PLMs) have driven substantial progress in natural language processing but remain vulnerable to adversarial attacks, raising concerns about their robustness in real-world applications. Previous studies have sought to mitigate the impact of adversarial attacks by introducing adversarial perturbations into the training process, either implicitly or explicitly. While both strategies enhance robustness, they often incur high computational costs. In this work, we propose a simple yet effective add-on module that enhances the adversarial robustness of PLMs by removing instance-level principal components, without relying on conventional adversarial defences or perturbing the original training data. Our approach transforms the embedding space to approximate Gaussian properties, thereby reducing its susceptibility to adversarial perturbations while preserving semantic relationships. This transformation aligns embedding distributions in a way that minimises the impact of adversarial noise on decision boundaries, enhancing robustness without requiring adversarial examples or costly training-time augmentation. Evaluations on eight benchmark datasets show that our approach improves adversarial robustness while maintaining comparable before-attack accuracy to baselines, achieving a balanced trade-off between robustness and generalisation.

  • 6 authors
·
Jul 29, 2025

Revisiting Pre-trained Language Models for Vulnerability Detection

The rapid advancement of pre-trained language models (PLMs) has demonstrated promising results for various code-related tasks. However, their effectiveness in detecting real-world vulnerabilities remains a critical challenge. % for the security community. While existing empirical studies evaluate PLMs for vulnerability detection (VD), their inadequate consideration in data preparation, evaluation setups, and experimental settings undermines the accuracy and comprehensiveness of evaluations. This paper introduces RevisitVD, an extensive evaluation of 17 PLMs spanning smaller code-specific PLMs and large-scale PLMs using newly constructed datasets. Specifically, we compare the performance of PLMs under both fine-tuning and prompt engineering, assess their effectiveness and generalizability across various training and testing settings, and analyze their robustness against code normalization, abstraction, and semantic-preserving transformations. Our findings reveal that, for VD tasks, PLMs incorporating pre-training tasks designed to capture the syntactic and semantic patterns of code outperform both general-purpose PLMs and those solely pre-trained or fine-tuned on large code corpora. However, these models face notable challenges in real-world scenarios, such as difficulties in detecting vulnerabilities with complex dependencies, handling perturbations introduced by code normalization and abstraction, and identifying semantic-preserving vulnerable code transformations. Also, the truncation caused by the limited context windows of PLMs can lead to a non-negligible amount of labeling errors. This study underscores the importance of thorough evaluations of model performance in practical scenarios and outlines future directions to help enhance the effectiveness of PLMs for realistic VD applications.

  • 5 authors
·
Jul 22, 2025

IRAD: Implicit Representation-driven Image Resampling against Adversarial Attacks

We introduce a novel approach to counter adversarial attacks, namely, image resampling. Image resampling transforms a discrete image into a new one, simulating the process of scene recapturing or rerendering as specified by a geometrical transformation. The underlying rationale behind our idea is that image resampling can alleviate the influence of adversarial perturbations while preserving essential semantic information, thereby conferring an inherent advantage in defending against adversarial attacks. To validate this concept, we present a comprehensive study on leveraging image resampling to defend against adversarial attacks. We have developed basic resampling methods that employ interpolation strategies and coordinate shifting magnitudes. Our analysis reveals that these basic methods can partially mitigate adversarial attacks. However, they come with apparent limitations: the accuracy of clean images noticeably decreases, while the improvement in accuracy on adversarial examples is not substantial. We propose implicit representation-driven image resampling (IRAD) to overcome these limitations. First, we construct an implicit continuous representation that enables us to represent any input image within a continuous coordinate space. Second, we introduce SampleNet, which automatically generates pixel-wise shifts for resampling in response to different inputs. Furthermore, we can extend our approach to the state-of-the-art diffusion-based method, accelerating it with fewer time steps while preserving its defense capability. Extensive experiments demonstrate that our method significantly enhances the adversarial robustness of diverse deep models against various attacks while maintaining high accuracy on clean images.

  • 6 authors
·
Oct 18, 2023

PEEM: Prompt Engineering Evaluation Metrics for Interpretable Joint Evaluation of Prompts and Responses

Prompt design is a primary control interface for large language models (LLMs), yet standard evaluations largely reduce performance to answer correctness, obscuring why a prompt succeeds or fails and providing little actionable guidance. We propose PEEM (Prompt Engineering Evaluation Metrics), a unified framework for joint and interpretable evaluation of both prompts and responses. PEEM defines a structured rubric with 9 axes: 3 prompt criteria (clarity/structure, linguistic quality, fairness) and 6 response criteria (accuracy, coherence, relevance, objectivity, clarity, conciseness), and uses an LLM-based evaluator to output (i) scalar scores on a 1-5 Likert scale and (ii) criterion-specific natural-language rationales grounded in the rubric. Across 7 benchmarks and 5 task models, PEEM's accuracy axis strongly aligns with conventional accuracy while preserving model rankings (aggregate Spearman rho about 0.97, Pearson r about 0.94, p < 0.001). A multi-evaluator study with four models shows consistent relative judgments (pairwise rho = 0.68-0.85), supporting evaluator-agnostic deployment. Beyond alignment, PEEM captures complementary linguistic failure modes and remains informative under prompt perturbations: prompt-quality trends track downstream accuracy under iterative rewrites, semantic adversarial manipulations induce clear score degradation, and meaning-preserving paraphrases yield high stability (robustness rate about 76.7-80.6%). Finally, using only PEEM scores and rationales as feedback, a zero-shot prompt rewriting loop improves downstream accuracy by up to 11.7 points, outperforming supervised and RL-based prompt-optimization baselines. Overall, PEEM provides a reproducible, criterion-driven protocol that links prompt formulation to response behavior and enables systematic diagnosis and optimization of LLM interactions.

  • 4 authors
·
Mar 11

Boosting Imperceptibility of Stable Diffusion-based Adversarial Examples Generation with Momentum

We propose a novel framework, Stable Diffusion-based Momentum Integrated Adversarial Examples (SD-MIAE), for generating adversarial examples that can effectively mislead neural network classifiers while maintaining visual imperceptibility and preserving the semantic similarity to the original class label. Our method leverages the text-to-image generation capabilities of the Stable Diffusion model by manipulating token embeddings corresponding to the specified class in its latent space. These token embeddings guide the generation of adversarial images that maintain high visual fidelity. The SD-MIAE framework consists of two phases: (1) an initial adversarial optimization phase that modifies token embeddings to produce misclassified yet natural-looking images and (2) a momentum-based optimization phase that refines the adversarial perturbations. By introducing momentum, our approach stabilizes the optimization of perturbations across iterations, enhancing both the misclassification rate and visual fidelity of the generated adversarial examples. Experimental results demonstrate that SD-MIAE achieves a high misclassification rate of 79%, improving by 35% over the state-of-the-art method while preserving the imperceptibility of adversarial perturbations and the semantic similarity to the original class label, making it a practical method for robust adversarial evaluation.

  • 7 authors
·
Oct 16, 2024

Inv-Entropy: A Fully Probabilistic Framework for Uncertainty Quantification in Language Models

Large language models (LLMs) have transformed natural language processing, but their reliable deployment requires effective uncertainty quantification (UQ). Existing UQ methods are often heuristic and lack a probabilistic foundation. This paper begins by providing a theoretical justification for the role of perturbations in UQ for LLMs. We then introduce a dual random walk perspective, modeling input-output pairs as two Markov chains with transition probabilities defined by semantic similarity. Building on this, we propose a fully probabilistic framework based on an inverse model, which quantifies uncertainty by evaluating the diversity of the input space conditioned on a given output through systematic perturbations. Within this framework, we define a new uncertainty measure, Inv-Entropy. A key strength of our framework is its flexibility: it supports various definitions of uncertainty measures, embeddings, perturbation strategies, and similarity metrics. We also propose GAAP, a perturbation algorithm based on genetic algorithms, which enhances the diversity of sampled inputs. In addition, we introduce a new evaluation metric, Temperature Sensitivity of Uncertainty (TSU), which directly assesses uncertainty without relying on correctness as a proxy. Extensive experiments demonstrate that Inv-Entropy outperforms existing semantic UQ methods. The code to reproduce the results can be found at https://github.com/UMDataScienceLab/Uncertainty-Quantification-for-LLMs.

  • 5 authors
·
Jun 11, 2025

Efficient Hallucination Detection: Adaptive Bayesian Estimation of Semantic Entropy with Guided Semantic Exploration

Large language models (LLMs) have achieved remarkable success in various natural language processing tasks, yet they remain prone to generating factually incorrect outputs known as hallucinations. While recent approaches have shown promise for hallucination detection by repeatedly sampling from LLMs and quantifying the semantic inconsistency among the generated responses, they rely on fixed sampling budgets that fail to adapt to query complexity, resulting in computational inefficiency. We propose an Adaptive Bayesian Estimation framework for Semantic Entropy with Guided Semantic Exploration, which dynamically adjusts sampling requirements based on observed uncertainty. Our approach employs a hierarchical Bayesian framework to model the semantic distribution, enabling dynamic control of sampling iterations through variance-based thresholds that terminate generation once sufficient certainty is achieved. We also develop a perturbation-based importance sampling strategy to systematically explore the semantic space. Extensive experiments on four QA datasets demonstrate that our method achieves superior hallucination detection performance with significant efficiency gains. In low-budget scenarios, our approach requires about 50% fewer samples to achieve comparable detection performance to existing methods, while delivers an average AUROC improvement of 12.6% under the same sampling budget.

  • 8 authors
·
Mar 23

Vision Matters: Simple Visual Perturbations Can Boost Multimodal Math Reasoning

Despite the rapid progress of multimodal large language models (MLLMs), they have largely overlooked the importance of visual processing. In a simple yet revealing experiment, we interestingly find that language-only models, when provided with image captions, can achieve comparable or even better performance than MLLMs that consume raw visual inputs. This suggests that current MLLMs may generate accurate visual descriptions but fail to effectively integrate them during reasoning. Motivated by this, we propose a simple visual perturbation framework that enhances perceptual robustness without requiring algorithmic modifications or additional training data. Our approach introduces three targeted perturbations: distractor concatenation, dominance-preserving mixup, and random rotation, that can be easily integrated into existing post-training pipelines including SFT, DPO, and GRPO. Through extensive experiments across multiple datasets, we demonstrate consistent improvements in mathematical reasoning performance, with gains comparable to those achieved through algorithmic changes. Additionally, we achieve competitive performance among open-source 7B RL-tuned models by training Qwen2.5-VL-7B with visual perturbation. Through comprehensive ablation studies, we analyze the effectiveness of different perturbation strategies, revealing that each perturbation type contributes uniquely to different aspects of visual reasoning. Our findings highlight the critical role of visual perturbation in multimodal mathematical reasoning: better reasoning begins with better seeing. Our code is available at https://github.com/YutingLi0606/Vision-Matters.

  • 7 authors
·
Jun 11, 2025 2

Pixel Sentence Representation Learning

Pretrained language models are long known to be subpar in capturing sentence and document-level semantics. Though heavily investigated, transferring perturbation-based methods from unsupervised visual representation learning to NLP remains an unsolved problem. This is largely due to the discreteness of subword units brought by tokenization of language models, limiting small perturbations of inputs to form semantics-preserved positive pairs. In this work, we conceptualize the learning of sentence-level textual semantics as a visual representation learning process. Drawing from cognitive and linguistic sciences, we introduce an unsupervised visual sentence representation learning framework, employing visually-grounded text perturbation methods like typos and word order shuffling, resonating with human cognitive patterns, and enabling perturbation to texts to be perceived as continuous. Our approach is further bolstered by large-scale unsupervised topical alignment training and natural language inference supervision, achieving comparable performance in semantic textual similarity (STS) to existing state-of-the-art NLP methods. Additionally, we unveil our method's inherent zero-shot cross-lingual transferability and a unique leapfrogging pattern across languages during iterative training. To our knowledge, this is the first representation learning method devoid of traditional language models for understanding sentence and document semantics, marking a stride closer to human-like textual comprehension. Our code is available at https://github.com/gowitheflow-1998/Pixel-Linguist

  • 10 authors
·
Feb 12, 2024

A Frustratingly Simple Yet Highly Effective Attack Baseline: Over 90% Success Rate Against the Strong Black-box Models of GPT-4.5/4o/o1

Despite promising performance on open-source large vision-language models (LVLMs), transfer-based targeted attacks often fail against black-box commercial LVLMs. Analyzing failed adversarial perturbations reveals that the learned perturbations typically originate from a uniform distribution and lack clear semantic details, resulting in unintended responses. This critical absence of semantic information leads commercial LVLMs to either ignore the perturbation entirely or misinterpret its embedded semantics, thereby causing the attack to fail. To overcome these issues, we notice that identifying core semantic objects is a key objective for models trained with various datasets and methodologies. This insight motivates our approach that refines semantic clarity by encoding explicit semantic details within local regions, thus ensuring interoperability and capturing finer-grained features, and by concentrating modifications on semantically rich areas rather than applying them uniformly. To achieve this, we propose a simple yet highly effective solution: at each optimization step, the adversarial image is cropped randomly by a controlled aspect ratio and scale, resized, and then aligned with the target image in the embedding space. Experimental results confirm our hypothesis. Our adversarial examples crafted with local-aggregated perturbations focused on crucial regions exhibit surprisingly good transferability to commercial LVLMs, including GPT-4.5, GPT-4o, Gemini-2.0-flash, Claude-3.5-sonnet, Claude-3.7-sonnet, and even reasoning models like o1, Claude-3.7-thinking and Gemini-2.0-flash-thinking. Our approach achieves success rates exceeding 90% on GPT-4.5, 4o, and o1, significantly outperforming all prior state-of-the-art attack methods. Our optimized adversarial examples under different configurations and training code are available at https://github.com/VILA-Lab/M-Attack.

  • 5 authors
·
Mar 13, 2025 2

Assessing the Sensitivity and Alignment of FOL Closeness Metrics

The recent successful paradigm of solving logical reasoning problems with tool-augmented large language models (LLMs) leverages translation of natural language (NL) statements into First-Order Logic~(FOL) and external theorem provers. However, the correctness of FOL statements, comprising operators and text, often go unverified due to the lack of a reliable evaluation metric for comparing generated and ground-truth FOLs. In this paper, we conduct a comprehensive study on the sensitivity of existing NL-, FOL-, and graph-based metrics to capture differences between a sampled FOL and its corresponding ground-truth. We then measure the alignment between a metric-based ranking of FOL outputs and a strong LLM as-a-judge. To do this, we first apply operator and text-based perturbations to ground-truth FOL statements to assess metric sensitivity. We then evaluate metric robustness by comparing the metrics against LLMs judgment. Our empirical findings highlight a clear oversensitivity in the n-gram metric BLEU for text perturbations. The operator perturbation affects the semantic graph metric Smatch++ for structural changes, and the FOL metric for specific operator changes. We observe a closer alignment between BertScore and LLM judgement, proving the importance of semantic evaluation. Additionally, we show that combining metrics enhances both robustness and sensitivity compared to using individual metrics.

  • 3 authors
·
Jan 15, 2025

Retrieval-Augmented Generation for Predicting Cellular Responses to Gene Perturbation

Predicting how cells respond to genetic perturbations is fundamental to understanding gene function, disease mechanisms, and therapeutic development. While recent deep learning approaches have shown promise in modeling single-cell perturbation responses, they struggle to generalize across cell types and perturbation contexts due to limited contextual information during generation. We introduce PT-RAG (Perturbation-aware Two-stage Retrieval-Augmented Generation), a novel framework that extends Retrieval-Augmented Generation beyond traditional language-model applications to cellular biology. Unlike standard RAG systems designed for text retrieval with pre-trained LLMs, perturbation retrieval lacks established similarity metrics and requires learning what constitutes relevant context, making differentiable retrieval essential. PT-RAG addresses this through a two-stage pipeline: first, retrieving candidate perturbations K using GenePT embeddings, then adaptively refining the selection through Gumbel-Softmax discrete sampling conditioned on both the cell state and the input perturbation. This cell-type-aware differentiable retrieval enables end-to-end optimization of the retrieval objective jointly with generation. On the Replogle-Nadig single-gene perturbation dataset, we demonstrate that PT-RAG outperforms both STATE and vanilla RAG under identical experimental conditions, with the strongest gains in distributional similarity metrics (W_1, W_2). Notably, vanilla RAG's dramatic failure is itself a key finding: it demonstrates that differentiable, cell-type-aware retrieval is essential in this domain, and that naive retrieval can actively harm performance. Our results establish retrieval-augmented generation as a promising paradigm for modelling cellular responses to gene perturbation. The code to reproduce our experiments is available at https://github.com/difra100/PT-RAG_ICLR.

The Gauss-Markov Adjunction: Categorical Semantics of Residuals in Supervised Learning

Enhancing the intelligibility and interpretability of machine learning is a crucial task in responding to the demand for Explicability as an AI principle, and in promoting the better social implementation of AI. The aim of our research is to contribute to this improvement by reformulating machine learning models through the lens of category theory, thereby developing a semantic framework for structuring and understanding AI systems. Our categorical modeling in this paper clarifies and formalizes the structural interplay between residuals and parameters in supervised learning. The present paper focuses on the multiple linear regression model, which represents the most basic form of supervised learning. By defining two concrete categories corresponding to parameters and data, along with an adjoint pair of functors between them, we introduce our categorical formulation of supervised learning. We show that the essential structure of this framework is captured by what we call the Gauss-Markov Adjunction. Within this setting, the dual flow of information can be explicitly described as a correspondence between variations in parameters and residuals. The ordinary least squares estimator for the parameters and the minimum residual are related via the preservation of limits by the right adjoint functor. Furthermore, we position this formulation as an instance of extended denotational semantics for supervised learning, and propose applying a semantic perspective developed in theoretical computer science as a formal foundation for Explicability in AI.

  • 1 authors
·
Jul 3, 2025 1

Asymptotic Semantic Collapse in Hierarchical Optimization

Multi-agent language systems can exhibit a failure mode where a shared dominant context progressively absorbs individual semantics, yielding near-uniform behavior across agents. We study this effect under the name Asymptotic Semantic Collapse in Hierarchical Optimization. In a closed linguistic setting with a Dominant Anchor Node whose semantic state has effectively infinite inertia, we show that repeated interactions with Peripheral Agent Nodes drive an asymptotic alignment that minimizes a global loss. We model semantic states as points on a Riemannian manifold and analyze the induced projection dynamics. Two consequences follow. First, the limiting semantic configuration is insensitive to the optimization history: both smooth gradient-style updates and stochastic noisy updates converge to the same topological endpoint, establishing path independence at convergence. Second, the degree of context dependence controls information content: moving from atomic (independent) representations to fully entangled (context-bound) representations forces the node entropy, interpreted as available degrees of freedom, to vanish in the limit. The theory connects information-theoretic quantities with differential-geometric structure and suggests an interpretation as an immutable consensus rule that constrains agents to a shared semantic grammar. A lightweight dataset-free benchmark on an RWKV-7 13B GGUF checkpoint complements the analysis, reporting zero hash collisions, mean compliance of 0.50 under greedy decoding and 0.531 under stochastic decoding, and final Jaccard-to-anchor similarity values of 0.295 and 0.224, respectively.

  • 2 authors
·
Jan 31

Evidence of Meaning in Language Models Trained on Programs

We present evidence that language models can learn meaning despite being trained only to perform next token prediction on text, specifically a corpus of programs. Each program is preceded by a specification in the form of (textual) input-output examples. Working with programs enables us to precisely define concepts relevant to meaning in language (e.g., correctness and semantics), making program synthesis well-suited as an intermediate testbed for characterizing the presence (or absence) of meaning in language models. We first train a Transformer model on the corpus of programs, then probe the trained model's hidden states as it completes a program given a specification. Despite providing no inductive bias toward learning the semantics of the language, we find that a linear probe is able to extract abstractions of both current and future program states from the model states. Moreover, there is a strong, statistically significant correlation between the accuracy of the probe and the model's ability to generate a program that implements the specification. To evaluate whether the semantics are represented in the model states rather than learned by the probe, we design a novel experimental procedure that intervenes on the semantics of the language while preserving the lexicon and syntax. We also demonstrate that the model learns to generate correct programs that are, on average, shorter than those in the training set, which is evidence that language model outputs may differ from the training distribution in semantically meaningful ways. In summary, this paper does not propose any new techniques for training language models, but develops an experimental framework for and provides insights into the acquisition and representation of (formal) meaning in language models.

  • 2 authors
·
May 18, 2023

Learning the Legibility of Visual Text Perturbations

Many adversarial attacks in NLP perturb inputs to produce visually similar strings ('ergo' rightarrow 'epsilonrgo') which are legible to humans but degrade model performance. Although preserving legibility is a necessary condition for text perturbation, little work has been done to systematically characterize it; instead, legibility is typically loosely enforced via intuitions around the nature and extent of perturbations. Particularly, it is unclear to what extent can inputs be perturbed while preserving legibility, or how to quantify the legibility of a perturbed string. In this work, we address this gap by learning models that predict the legibility of a perturbed string, and rank candidate perturbations based on their legibility. To do so, we collect and release LEGIT, a human-annotated dataset comprising the legibility of visually perturbed text. Using this dataset, we build both text- and vision-based models which achieve up to 0.91 F1 score in predicting whether an input is legible, and an accuracy of 0.86 in predicting which of two given perturbations is more legible. Additionally, we discover that legible perturbations from the LEGIT dataset are more effective at lowering the performance of NLP models than best-known attack strategies, suggesting that current models may be vulnerable to a broad range of perturbations beyond what is captured by existing visual attacks. Data, code, and models are available at https://github.com/dvsth/learning-legibility-2023.

  • 4 authors
·
Mar 9, 2023

SafeRoPE: Risk-specific Head-wise Embedding Rotation for Safe Generation in Rectified Flow Transformers

Recent Text-to-Image (T2I) models based on rectified-flow transformers (e.g., SD3, FLUX) achieve high generative fidelity but remain vulnerable to unsafe semantics, especially when triggered by multi-token interactions. Existing mitigation methods largely rely on fine-tuning or attention modulation for concept unlearning; however, their expensive computational overhead and design tailored to U-Net-based denoisers hinder direct adaptation to transformer-based diffusion models (e.g., MMDiT). In this paper, we conduct an in-depth analysis of the attention mechanism in MMDiT and find that unsafe semantics concentrate within interpretable, low-dimensional subspaces at head level, where a finite set of safety-critical heads is responsible for unsafe feature extraction. We further observe that perturbing the Rotary Positional Embedding (RoPE) applied to the query and key vectors can effectively modify some specific concepts in the generated images. Motivated by these insights, we propose SafeRoPE, a lightweight and fine-grained safe generation framework for MMDiT. Specifically, SafeRoPE first constructs head-wise unsafe subspaces by decomposing unsafe embeddings within safety-critical heads, and computes a Latent Risk Score (LRS) for each input vector via projection onto these subspaces. We then introduce head-wise RoPE perturbations that can suppress unsafe semantics without degrading benign content or image quality. SafeRoPE combines both head-wise LRS and RoPE perturbations to perform risk-specific head-wise rotation on query and key vector embeddings, enabling precise suppression of unsafe outputs while maintaining generation fidelity. Extensive experiments demonstrate that SafeRoPE achieves SOTA performance in balancing effective harmful content mitigation and utility preservation for safe generation of MMDiT. Codes are available at https://github.com/deng12yx/SafeRoPE.

  • 6 authors
·
Apr 1

Semantic Sensitivities and Inconsistent Predictions: Measuring the Fragility of NLI Models

Recent studies of the emergent capabilities of transformer-based Natural Language Understanding (NLU) models have indicated that they have an understanding of lexical and compositional semantics. We provide evidence that suggests these claims should be taken with a grain of salt: we find that state-of-the-art Natural Language Inference (NLI) models are sensitive towards minor semantics preserving surface-form variations, which lead to sizable inconsistent model decisions during inference. Notably, this behaviour differs from valid and in-depth comprehension of compositional semantics, however does neither emerge when evaluating model accuracy on standard benchmarks nor when probing for syntactic, monotonic, and logically robust reasoning. We propose a novel framework to measure the extent of semantic sensitivity. To this end, we evaluate NLI models on adversarially generated examples containing minor semantics-preserving surface-form input noise. This is achieved using conditional text generation, with the explicit condition that the NLI model predicts the relationship between the original and adversarial inputs as a symmetric equivalence entailment. We systematically study the effects of the phenomenon across NLI models for in- and out-of- domain settings. Our experiments show that semantic sensitivity causes performance degradations of 12.92% and 23.71% average over in- and out-of- domain settings, respectively. We further perform ablation studies, analysing this phenomenon across models, datasets, and variations in inference and show that semantic sensitivity can lead to major inconsistency within model predictions.

  • 3 authors
·
Jan 25, 2024

The Butterfly Effect of Model Editing: Few Edits Can Trigger Large Language Models Collapse

Although model editing has shown promise in revising knowledge in Large Language Models (LLMs), its impact on the inherent capabilities of LLMs is often overlooked. In this work, we reveal a critical phenomenon: even a single edit can trigger model collapse, manifesting as significant performance degradation in various benchmark tasks. However, benchmarking LLMs after each edit, while necessary to prevent such collapses, is impractically time-consuming and resource-intensive. To mitigate this, we propose using perplexity as a surrogate metric, validated by extensive experiments demonstrating changes in an edited model's perplexity are strongly correlated with its downstream task performances. We further conduct an in-depth study on sequential editing, a practical setting for real-world scenarios, across various editing methods and LLMs, focusing on hard cases from our previous single edit studies. The results indicate that nearly all examined editing methods result in model collapse after only few edits. To facilitate further research, we have utilized GPT-3.5 to develop a new dataset, HardEdit, based on those hard cases. This dataset aims to establish the foundation for pioneering research in reliable model editing and the mechanisms underlying editing-induced model collapse. We hope this work can draw the community's attention to the potential risks inherent in model editing practices.

  • 6 authors
·
Feb 14, 2024

Small Edits, Big Consequences: Telling Good from Bad Robustness in Large Language Models

Large language models (LLMs) now write code in settings where misreading a single word can break safety or cost money, yet we still expect them to overlook stray typos. To probe where useful robustness ends and harmful insensitivity begins, we compile 50 LeetCode problems and craft three minimal prompt perturbations that should vary in importance: (i) progressive underspecification deleting 10 % of words per step; (ii) lexical flip swapping a pivotal quantifier ("max" to "min"); and (iii) jargon inflation replacing a common noun with an obscure technical synonym. Six frontier models, including three "reasoning-tuned" versions, solve each mutated prompt, and their Python outputs are checked against the original test suites to reveal whether they reused the baseline solution or adapted. Among 11 853 generations we observe a sharp double asymmetry. Models remain correct in 85 % of cases even after 90 % of the prompt is missing, showing over-robustness to underspecification, yet only 54 % react to a single quantifier flip that reverses the task, with reasoning-tuned variants even less sensitive than their bases. Jargon edits lie in between, passing through 56 %. Current LLMs thus blur the line between harmless noise and meaning - changing edits, often treating both as ignorable. Masking salient anchors such as function names can force re - evaluation. We advocate evaluation and training protocols that reward differential sensitivity: stay steady under benign noise but adapt - or refuse - when semantics truly change.

  • 2 authors
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Jul 14, 2025

PerturbDiff: Functional Diffusion for Single-Cell Perturbation Modeling

Building Virtual Cells that can accurately simulate cellular responses to perturbations is a long-standing goal in systems biology. A fundamental challenge is that high-throughput single-cell sequencing is destructive: the same cell cannot be observed both before and after a perturbation. Thus, perturbation prediction requires mapping unpaired control and perturbed populations. Existing models address this by learning maps between distributions, but typically assume a single fixed response distribution when conditioned on observed cellular context (e.g., cell type) and the perturbation type. In reality, responses vary systematically due to unobservable latent factors such as microenvironmental fluctuations and complex batch effects, forming a manifold of possible distributions for the same observed conditions. To account for this variability, we introduce PerturbDiff, which shifts modeling from individual cells to entire distributions. By embedding distributions as points in a Hilbert space, we define a diffusion-based generative process operating directly over probability distributions. This allows PerturbDiff to capture population-level response shifts across hidden factors. Benchmarks on established datasets show that PerturbDiff achieves state-of-the-art performance in single-cell response prediction and generalizes substantially better to unseen perturbations. See our project page (https://katarinayuan.github.io/PerturbDiff-ProjectPage/), where code and data will be made publicly available (https://github.com/DeepGraphLearning/PerturbDiff).

  • 6 authors
·
Feb 22

Masked Thought: Simply Masking Partial Reasoning Steps Can Improve Mathematical Reasoning Learning of Language Models

In reasoning tasks, even a minor error can cascade into inaccurate results, leading to suboptimal performance of large language models in such domains. Earlier fine-tuning approaches sought to mitigate this by leveraging more precise supervisory signals from human labeling, larger models, or self-sampling, although at a high cost. Conversely, we develop a method that avoids external resources, relying instead on introducing perturbations to the input. Our training approach randomly masks certain tokens within the chain of thought, a technique we found to be particularly effective for reasoning tasks. When applied to fine-tuning with GSM8K, this method achieved a 5% improvement in accuracy over standard supervised fine-tuning with a few codes modified and no additional labeling effort. Furthermore, it is complementary to existing methods. When integrated with related data augmentation methods, it leads to an average improvement of 3% improvement in GSM8K accuracy and 1% improvement in MATH accuracy across five datasets of various quality and size, as well as two base models. We further investigate the mechanisms behind this improvement through case studies and quantitative analysis, suggesting that our approach may provide superior support for the model in capturing long-distance dependencies, especially those related to questions. This enhancement could deepen understanding of premises in questions and prior steps. Our code is available at Github.

  • 9 authors
·
Mar 4, 2024

GSM-SEM: Benchmark and Framework for Generating Semantically Variant Augmentations

Benchmarks like GSM8K are popular measures of mathematical reasoning, but leaderboard gains can overstate true capability due to memorization of fixed test sets. Most robustness variants apply surface-level perturbations (paraphrases, renamings, number swaps, distractors) that largely preserve the underlying facts, and static releases can themselves become memorization targets over time. We introduce GSM-SEM, a reusable and stochastic framework for generating semantically diverse benchmark variants with substantially higher semantic variance than prior approaches. GSM-SEM perturbs problem statements by modifying entities, attributes, and/or relationships, frequently altering underlying facts and requiring models to recompute solutions under new conditions, while constraining generation to preserve the original calculations/answer and approximate problem difficulty. GSM-SEM generates fresh variants on each run without requiring re-annotation, reducing reliance on static public benchmarks for evaluation and thereby lowering the bias of memorization. We apply GSM-SEM on GSM8K and two existing variation suites (GSM-Symbolic and GSM-Plus), producing GSM8K-SEM, GSM-Symbolic-SEM, and GSM-Plus-SEM. Evaluating 14 SOTA LLMs, we observe consistent performance drops with larger decline when semantic perturbations are coupled with symbolic/plus variations (average drop rate 28% in maximum strictness configuration of GSM-SEM). We publicly release the three SEM variants as fully human-validated datasets. Finally, to demonstrate applicability beyond GSM-style math problems, we apply GSM-SEM to additional benchmarks including BigBenchHard, LogicBench, and NLR-BIRD.

  • 14 authors
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May 25

Denotational validation of higher-order Bayesian inference

We present a modular semantic account of Bayesian inference algorithms for probabilistic programming languages, as used in data science and machine learning. Sophisticated inference algorithms are often explained in terms of composition of smaller parts. However, neither their theoretical justification nor their implementation reflects this modularity. We show how to conceptualise and analyse such inference algorithms as manipulating intermediate representations of probabilistic programs using higher-order functions and inductive types, and their denotational semantics. Semantic accounts of continuous distributions use measurable spaces. However, our use of higher-order functions presents a substantial technical difficulty: it is impossible to define a measurable space structure over the collection of measurable functions between arbitrary measurable spaces that is compatible with standard operations on those functions, such as function application. We overcome this difficulty using quasi-Borel spaces, a recently proposed mathematical structure that supports both function spaces and continuous distributions. We define a class of semantic structures for representing probabilistic programs, and semantic validity criteria for transformations of these representations in terms of distribution preservation. We develop a collection of building blocks for composing representations. We use these building blocks to validate common inference algorithms such as Sequential Monte Carlo and Markov Chain Monte Carlo. To emphasize the connection between the semantic manipulation and its traditional measure theoretic origins, we use Kock's synthetic measure theory. We demonstrate its usefulness by proving a quasi-Borel counterpart to the Metropolis-Hastings-Green theorem.

  • 10 authors
·
Nov 8, 2017

Stable-RAG: Mitigating Retrieval-Permutation-Induced Hallucinations in Retrieval-Augmented Generation

Retrieval-Augmented Generation (RAG) has become a key paradigm for reducing factual hallucinations in large language models (LLMs), yet little is known about how the order of retrieved documents affects model behavior. We empirically show that under Top-5 retrieval with the gold document included, LLM answers vary substantially across permutations of the retrieved set, even when the gold document is fixed in the first position. This reveals a previously underexplored sensitivity to retrieval permutations. Although robust RAG methods primarily focus on enhancing LLM robustness to low-quality retrieval and mitigating positional bias to distribute attention fairly over long contexts, neither approach directly addresses permutation sensitivity. In this paper, we propose Stable-RAG, which exploits permutation sensitivity estimation to mitigate permutation-induced hallucinations. Stable-RAG runs the generator under multiple retrieval orders, clusters hidden states, and decodes from a cluster-center representation that captures the dominant reasoning pattern. It then uses these reasoning results to align hallucinated outputs toward the correct answer, encouraging the model to produce consistent and accurate predictions across document permutations. Experiments on three QA datasets show that Stable-RAG significantly improves answer accuracy, reasoning consistency and robust generalization across datasets, retrievers, and input lengths compared with baselines.

ReCode: Robustness Evaluation of Code Generation Models

Code generation models have achieved impressive performance. However, they tend to be brittle as slight edits to a prompt could lead to very different generations; these robustness properties, critical for user experience when deployed in real-life applications, are not well understood. Most existing works on robustness in text or code tasks have focused on classification, while robustness in generation tasks is an uncharted area and to date there is no comprehensive benchmark for robustness in code generation. In this paper, we propose ReCode, a comprehensive robustness evaluation benchmark for code generation models. We customize over 30 transformations specifically for code on docstrings, function and variable names, code syntax, and code format. They are carefully designed to be natural in real-life coding practice, preserve the original semantic meaning, and thus provide multifaceted assessments of a model's robustness performance. With human annotators, we verified that over 90% of the perturbed prompts do not alter the semantic meaning of the original prompt. In addition, we define robustness metrics for code generation models considering the worst-case behavior under each type of perturbation, taking advantage of the fact that executing the generated code can serve as objective evaluation. We demonstrate ReCode on SOTA models using HumanEval, MBPP, as well as function completion tasks derived from them. Interesting observations include: better robustness for CodeGen over InCoder and GPT-J; models are most sensitive to syntax perturbations; more challenging robustness evaluation on MBPP over HumanEval.

  • 14 authors
·
Dec 20, 2022

SCA: Improve Semantic Consistent in Unrestricted Adversarial Attacks via DDPM Inversion

Systems based on deep neural networks are vulnerable to adversarial attacks. Unrestricted adversarial attacks typically manipulate the semantic content of an image (e.g., color or texture) to create adversarial examples that are both effective and photorealistic. Recent works have utilized the diffusion inversion process to map images into a latent space, where high-level semantics are manipulated by introducing perturbations. However, they often result in substantial semantic distortions in the denoised output and suffer from low efficiency. In this study, we propose a novel framework called Semantic-Consistent Unrestricted Adversarial Attacks (SCA), which employs an inversion method to extract edit-friendly noise maps and utilizes a Multimodal Large Language Model (MLLM) to provide semantic guidance throughout the process. Under the condition of rich semantic information provided by MLLM, we perform the DDPM denoising process of each step using a series of edit-friendly noise maps and leverage DPM Solver++ to accelerate this process, enabling efficient sampling with semantic consistency. Compared to existing methods, our framework enables the efficient generation of adversarial examples that exhibit minimal discernible semantic changes. Consequently, we for the first time introduce Semantic-Consistent Adversarial Examples (SCAE). Extensive experiments and visualizations have demonstrated the high efficiency of SCA, particularly in being on average 12 times faster than the state-of-the-art attacks. Our code can be found at https://github.com/Pan-Zihao/SCA.

SunYatsen Sun Yat-Sen University
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Oct 3, 2024

Semantic Probabilistic Control of Language Models

Semantic control entails steering LM generations towards satisfying subtle non-lexical constraints, e.g., toxicity, sentiment, or politeness, attributes that can be captured by a sequence-level verifier. It can thus be viewed as sampling from the LM distribution conditioned on the target attribute, a computationally intractable problem due to the non-decomposable nature of the verifier. Existing approaches to LM control either only deal with syntactic constraints which cannot capture the aforementioned attributes, or rely on sampling to explore the conditional LM distribution, an ineffective estimator for low-probability events. In this work, we leverage a verifier's gradient information to efficiently reason over all generations that satisfy the target attribute, enabling precise steering of LM generations by reweighing the next-token distribution. Starting from an initial sample, we create a local LM distribution favoring semantically similar sentences. This approximation enables the tractable computation of an expected sentence embedding. We use this expected embedding, informed by the verifier's evaluation at the initial sample, to estimate the probability of satisfying the constraint, which directly informs the update to the next-token distribution. We evaluated the effectiveness of our approach in controlling the toxicity, sentiment, and topic-adherence of LMs yielding generations satisfying the constraint with high probability (>95%) without degrading their quality.

  • 4 authors
·
May 3, 2025

Revisit Input Perturbation Problems for LLMs: A Unified Robustness Evaluation Framework for Noisy Slot Filling Task

With the increasing capabilities of large language models (LLMs), these high-performance models have achieved state-of-the-art results on a wide range of natural language processing (NLP) tasks. However, the models' performance on commonly-used benchmark datasets often fails to accurately reflect their reliability and robustness when applied to real-world noisy data. To address these challenges, we propose a unified robustness evaluation framework based on the slot-filling task to systematically evaluate the dialogue understanding capability of LLMs in diverse input perturbation scenarios. Specifically, we construct a input perturbation evaluation dataset, Noise-LLM, which contains five types of single perturbation and four types of mixed perturbation data. Furthermore, we utilize a multi-level data augmentation method (character, word, and sentence levels) to construct a candidate data pool, and carefully design two ways of automatic task demonstration construction strategies (instance-level and entity-level) with various prompt templates. Our aim is to assess how well various robustness methods of LLMs perform in real-world noisy scenarios. The experiments have demonstrated that the current open-source LLMs generally achieve limited perturbation robustness performance. Based on these experimental observations, we make some forward-looking suggestions to fuel the research in this direction.

  • 11 authors
·
Oct 10, 2023

RemoteShield: Enable Robust Multimodal Large Language Models for Earth Observation

A robust Multimodal Large Language Model (MLLM) for Earth Observation should maintain consistent interpretation and reasoning under realistic input variations. However, current Remote Sensing MLLMs fail to meet this requirement. Trained on carefully curated clean datasets, they learn brittle mappings that do not generalize to noisy conditions in operational Earth Observation. Consequently, their performance degrades when confronted with imperfect inputs in deployment. To quantify this vulnerability, we construct a realistic set of multimodal perturbations, including visual degradations such as cloud and fog cover, together with diverse human-centric textual variations ranging from colloquialisms to vague or omitted instructions. Empirical evaluations show that these perturbations significantly impair the visual-semantic reasoning capabilities of leading RS foundation models. To address this limitation, we introduce RemoteShield, a robust Remote Sensing MLLM trained to maintain consistent outputs across realistic input variations. During training, each clean sample is paired with its image-text perturbed variants to form a semantic equivalence cluster. Rather than directly fitting noisy samples, RemoteShield is optimized through preference learning over clean and perturbed conditions within the same cluster. By comparing model responses to clean and corrupted inputs, the model is encouraged to favor stable responses over perturbation-induced failures. This cross-condition alignment helps the model focus on underlying task semantics despite visual degradations and textual noise. Experiments on three Earth Observation tasks show that RemoteShield consistently delivers stronger robustness and cross-condition consistency than representative baselines under realistic multimodal perturbations.

  • 8 authors
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Apr 18

Differentially Private Empirical Risk Minimization

Privacy-preserving machine learning algorithms are crucial for the increasingly common setting in which personal data, such as medical or financial records, are analyzed. We provide general techniques to produce privacy-preserving approximations of classifiers learned via (regularized) empirical risk minimization (ERM). These algorithms are private under the ε-differential privacy definition due to Dwork et al. (2006). First we apply the output perturbation ideas of Dwork et al. (2006), to ERM classification. Then we propose a new method, objective perturbation, for privacy-preserving machine learning algorithm design. This method entails perturbing the objective function before optimizing over classifiers. If the loss and regularizer satisfy certain convexity and differentiability criteria, we prove theoretical results showing that our algorithms preserve privacy, and provide generalization bounds for linear and nonlinear kernels. We further present a privacy-preserving technique for tuning the parameters in general machine learning algorithms, thereby providing end-to-end privacy guarantees for the training process. We apply these results to produce privacy-preserving analogues of regularized logistic regression and support vector machines. We obtain encouraging results from evaluating their performance on real demographic and benchmark data sets. Our results show that both theoretically and empirically, objective perturbation is superior to the previous state-of-the-art, output perturbation, in managing the inherent tradeoff between privacy and learning performance.

  • 3 authors
·
Feb 15, 2011

Not All Semantics are Created Equal: Contrastive Self-supervised Learning with Automatic Temperature Individualization

In this paper, we aim to optimize a contrastive loss with individualized temperatures in a principled and systematic manner for self-supervised learning. The common practice of using a global temperature parameter tau ignores the fact that ``not all semantics are created equal", meaning that different anchor data may have different numbers of samples with similar semantics, especially when data exhibits long-tails. First, we propose a new robust contrastive loss inspired by distributionally robust optimization (DRO), providing us an intuition about the effect of tau and a mechanism for automatic temperature individualization. Then, we propose an efficient stochastic algorithm for optimizing the robust contrastive loss with a provable convergence guarantee without using large mini-batch sizes. Theoretical and experimental results show that our algorithm automatically learns a suitable tau for each sample. Specifically, samples with frequent semantics use large temperatures to keep local semantic structures, while samples with rare semantics use small temperatures to induce more separable features. Our method not only outperforms prior strong baselines (e.g., SimCLR, CLIP) on unimodal and bimodal datasets with larger improvements on imbalanced data but also is less sensitive to hyper-parameters. To our best knowledge, this is the first methodical approach to optimizing a contrastive loss with individualized temperatures.

  • 6 authors
·
May 19, 2023

scDFM: Distributional Flow Matching Model for Robust Single-Cell Perturbation Prediction

A central goal in systems biology and drug discovery is to predict the transcriptional response of cells to perturbations. This task is challenging due to the noisy and sparse nature of single-cell measurements, as well as the fact that perturbations often induce population-level shifts rather than changes in individual cells. Existing deep learning methods typically assume cell-level correspondences, limiting their ability to capture such global effects. We present scDFM, a generative framework based on conditional flow matching that models the full distribution of perturbed cells conditioned on control states. By incorporating a maximum mean discrepancy (MMD) objective, our method aligns perturbed and control populations beyond cell-level correspondences. To further improve robustness to sparsity and noise, we introduce the Perturbation-Aware Differential Transformer (PAD-Transformer), a backbone architecture that leverages gene interaction graphs and differential attention to capture context-specific expression changes. Across multiple genetic and drug perturbation benchmarks, scDFM consistently outperforms prior methods, demonstrating strong generalization in both unseen and combinatorial settings. In the combinatorial setting, it reduces mean squared error by 19.6% relative to the strongest baseline. These results highlight the importance of distribution-level generative modeling for robust in silico perturbation prediction. The code is available at https://github.com/AI4Science-WestlakeU/scDFM

  • 4 authors
·
Feb 5

Semantic Item Graph Enhancement for Multimodal Recommendation

Multimodal recommendation systems have attracted increasing attention for their improved performance by leveraging items' multimodal information. Prior methods often build modality-specific item-item semantic graphs from raw modality features and use them as supplementary structures alongside the user-item interaction graph to enhance user preference learning. However, these semantic graphs suffer from semantic deficiencies, including (1) insufficient modeling of collaborative signals among items and (2) structural distortions introduced by noise in raw modality features, ultimately compromising performance. To address these issues, we first extract collaborative signals from the interaction graph and infuse them into each modality-specific item semantic graph to enhance semantic modeling. Then, we design a modulus-based personalized embedding perturbation mechanism that injects perturbations with modulus-guided personalized intensity into embeddings to generate contrastive views. This enables the model to learn noise-robust representations through contrastive learning, thereby reducing the effect of structural noise in semantic graphs. Besides, we propose a dual representation alignment mechanism that first aligns multiple semantic representations via a designed Anchor-based InfoNCE loss using behavior representations as anchors, and then aligns behavior representations with the fused semantics by standard InfoNCE, to ensure representation consistency. Extensive experiments on four benchmark datasets validate the effectiveness of our framework.

  • 5 authors
·
Aug 8, 2025

The Paradox of Robustness: Decoupling Rule-Based Logic from Affective Noise in High-Stakes Decision-Making

While Large Language Models (LLMs) are widely documented to be sensitive to minor prompt perturbations and prone to sycophantic alignment with user biases, their robustness in consequential, rule-bound decision-making remains under-explored. In this work, we uncover a striking "Paradox of Robustness": despite their known lexical brittleness, instruction-tuned LLMs exhibit a behavioral and near-total invariance to emotional framing effects. Using a novel controlled perturbation framework across three high-stakes domains (healthcare, law, and finance), we quantify a robustness gap where LLMs demonstrate 110-300 times greater resistance to narrative manipulation than human subjects. Specifically, we find a near-zero effect size for models (Cohen's h = 0.003) compared to the substantial biases observed in humans (Cohen's h in [0.3, 0.8]). This result is highly counterintuitive and suggests the mechanisms driving sycophancy and prompt sensitivity do not necessarily translate to a failure in logical constraint satisfaction. We show that this invariance persists across models with diverse training paradigms. Our findings show that while LLMs may be "brittle" to how a query is formatted, they are remarkably "stable" against why a decision should be biased. Our findings establish that instruction-tuned models can decouple logical rule-adherence from persuasive narratives, offering a source of decision stability that complements, and even potentially de-biases, human judgment in institutional contexts. We release the 162-scenario benchmark, code, and data to facilitate the rigorous evaluation of narrative-induced bias and robustness on GitHub.com.

  • 2 authors
·
Jan 29

RE-Searcher: Robust Agentic Search with Goal-oriented Planning and Self-reflection

Large language models (LLMs) excel at knowledge-intensive question answering and reasoning, yet their real-world deployment remains constrained by knowledge cutoff, hallucination, and limited interaction modalities. Augmenting LLMs with external search tools helps alleviate these issues, but it also exposes agents to a complex search environment in which small, plausible variations in query formulation can steer reasoning into unproductive trajectories and amplify errors. We present a systematic analysis that quantifies how environmental complexity induces fragile search behaviors and, in turn, degrades overall performance. To address this challenge, we propose a simple yet effective approach to instantiate a search agent, RE-Searcher. During search, RE-Searcher explicitly articulates a concrete search goal and subsequently reflects on whether the retrieved evidence satisfies that goal. This combination of goal-oriented planning and self-reflection enables RE-Searcher to resist spurious cues in complex search environments and perform robust search. Extensive experiments show that our method improves search accuracy and achieves state-of-the-art results. Perturbation studies further demonstrate substantial resilience to noisy or misleading external signals, mitigating the fragility of the search process. We believe these findings offer practical guidance for integrating LLM-powered agents into more complex interactive environments and enabling more autonomous decision-making.

  • 14 authors
·
Sep 30, 2025

On Code-Induced Reasoning in LLMs

Code data has been shown to enhance the reasoning capabilities of large language models (LLMs), but it remains unclear which aspects of code are most responsible. We investigate this question with a systematic, data-centric framework. We construct parallel instruction datasets in ten programming languages and apply controlled perturbations that selectively disrupt structural or semantic properties of code. We then finetune LLMs from five model families and eight scales on each variant and evaluate their performance on natural language, math, and code tasks. Across 3,331 experiments, our results show that LLMs are more vulnerable to structural perturbations than semantic ones, particularly on math and code tasks. Appropriate abstractions like pseudocode and flowcharts can be as effective as code, while encoding the same information with fewer tokens without adhering to original syntax can often retain or even improve performance. Remarkably, even corrupted code with misleading signals remains competitive when surface-level regularities persist. Finally, syntactic styles also shape task-specific gains with Python favoring natural language reasoning and lower-level languages such as Java and Rust favoring math. Through our systematic framework, we aim to provide insight into how different properties of code influence reasoning and inform the design of training data for enhancing LLM reasoning capabilities.